MouseV k gene classification by nucleic acid sequence similarity

R Strohal, A Helmberg, G Kroemer, R Kofler - Immunogenetics, 1989 - Springer
R Strohal, A Helmberg, G Kroemer, R Kofler
Immunogenetics, 1989Springer
Analyses of immunoglobulin (Ig) variable (V) region gene usage in the immune response,
estimates of V gene germline complexity, and other nucleic acid hybridization-based studies
depend on the extent to which such genes are related (ie, sequence similarity) and their
organization in gene families. While mouse Igh heavy chain V region (VH) gene families are
relatively well-established, a corresponding systematic classification of Igk light chain V
region (V k) genes has not been reported. The present analysis, in the course of which we …
Abstract
Analyses of immunoglobulin (Ig) variable (V) region gene usage in the immune response, estimates ofV gene germline complexity, and other nucleic acid hybridization-based studies depend on the extent to which such genes are related (i. e., sequence similarity) and their organization in gene families. While mouseIgh heavy chainV region (V H ) gene families are relatively well-established, a corresponding systematic classification ofIgk light chainV region (V k ) genes has not been reported. The present analysis, in the course of which we reviewed the known extent of theV k germline gene repertoire andV k gene usage in a variety of responses to foreign and self antigens, provides a classification of mouseV k genes in gene families composed of members with >80% overall nucleic acid sequence similarity. This classification differed in several aspects from that ofV H genes: only someV k gene families were as clearly separated (by >25% sequence dissimilarity) as typicalV H gene families; mostV k gene families were closely related and, in several instances, members from different families were very similar (>80%) over large sequence portions; frequently, classification by nucleic acid sequence similarity diverged from existing classifications based on amino-terminal protein sequence similarity. Our data have implications forV k gene analyses by nucleic acid hybridization and describe potentially important differences in sequence organization betweenV H andV k genes.
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